NAligner library v0.1

SmithWatermanGotoh.Align Method 

Aligns two sequences by Smith-Waterman algorithm

public static Alignment Align(
   Sequence s1,
   Sequence s2,
   Matrix matrix,
   float o,
   float e
);

Parameters

s1
sequene #1
s2
sequene #2
matrix
scoring matrix
o
open gap penalty
e
extend gap penalty

Return Value

alignment object contains the two aligned sequences, the alignment score and alignment statistics

See Also

SmithWatermanGotoh Class | NAligner Namespace | Sequence | Matrix