Group of formats for output alignments.
| Class | Description |
|---|---|
| AlignmentFormatter | Abstract format |
| CLUSTAL | CLUSTAL format. Example:CLUSTAL_FORMAT W(1.60) multiple sequence alignment JC2395 NVSDVNLNK---YIWRTAEKMK---ICDAKKFARQHKIPESKIDEIEHNSPQDAAE---- KPEL_DROME MAIRLLPLPVRAQLCAHLDAL-----DVWQQLATAVKLYPDQVEQISSQKQRGRS----- FASA_MOUSE NASNLSLSK---YIPRIAEDMT---IQEAKKFARENNIKEGKIDEIMHDSIQDTAE---- JC2395 -------------------------QKIQLLQCWYQSHGKT--GACQALIQGLRKANRCD KPEL_DROME -------------------------ASNEFLNIWGGQYN----HTVQTLFALFKKLKLHN FASA_MOUSE -------------------------QKVQLLLCWYQSHGKS--DAYQDLIKGLKKAECRR JC2395 IAEEIQAM KPEL_DROME AMRLIKDY FASA_MOUSE TLDKFQDM |
| FASTA | FASTA formatter |
| FormatterFactory | Singleton formatter factory. |
| Pair | Pair format. |