Implementation of Smith-Waterman-Gotoh algorithm.
NAligner is a port of JAligner.
Original author: Ahmed Moustafa (ahmed@users.sf.net).
.Net port by Joannes Vermorel.
| Class | Description |
|---|---|
| Alignment | Holds the output of a pairwise sequences alignment. |
| Cell | A cell in a similarity matrix, to hold row, column and score. |
| Directions | Traceback directions. |
| Markups | Markups line characters. |
| Matrix | Scoring matrix. |
| Sequence | A basic (nucleic or protein) sequence. It's a wrapper to string. |
| SmithWatermanGotoh | An implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment. |