sync toc
NAligner
Alignment Class
Alignment Members
Alignment Constructor
Fields
GAP Field
Properties
Extend Property
Gaps Property
Identity Property
MarkupLine Property
Matrix Property
Name1 Property
Name2 Property
Open Property
Score Property
Sequence1 Property
Sequence2 Property
Similarity Property
Start1 Property
Start2 Property
Summary Property
Cell Class
Cell Members
Cell Constructor
Properties
Column Property
Row Property
Score Property
Methods
Set Method
Directions Class
Directions Members
Directions Constructor
Fields
DIAGONAL Field
LEFT Field
STOP Field
UP Field
Markups Class
Markups Members
Markups Constructor
Fields
GAP Field
IDENTITY Field
MISMATCH Field
SIMILARITY Field
Matrix Class
Matrix Members
Matrix Constructor
Properties
Id Property
Scores Property
Methods
GetScore Method
Load Method
Sequence Class
Sequence Members
Sequence Constructor
Sequence Constructor ()
Sequence Constructor (String, String, String, Int32)
Fields
NUCLEIC Field
PROTEIN Field
Properties
AAList Property
Description Property
Id Property
Type Property
Methods
AcidAt Method
Length Method
Parse Method
Parse Method (FileInfo)
Parse Method (String)
Subsequence Method
ToArray Method
SmithWatermanGotoh Class
SmithWatermanGotoh Members
Methods
Align Method
NAligner.formats
AlignmentFormatter Class
AlignmentFormatter Members
AlignmentFormatter Constructor
Properties
Id Property
Methods
Format Method
CLUSTAL Class
CLUSTAL Members
CLUSTAL Constructor
Methods
Format Method
Format Method (Alignment)
Format Method (String[], String[])
FASTA Class
FASTA Members
FASTA Constructor
Methods
Format Method
Format Method (Alignment)
Format Method (Sequence)
FormatterFactory Class
FormatterFactory Members
Properties
Default Property
Formatters Property
Methods
GetFormatter Method
RegisterFormatter Method
Pair Class
Pair Members
Pair Constructor
Methods
Format Method
NAligner.util
AlphanumericComparator Class
AlphanumericComparator Members
AlphanumericComparator Constructor
Methods
Compare Method
Commons Class
Commons Members
Commons Constructor
Properties
CurrentRelease Property
FileSeparator Property
LineSeparator Property
UserDirectory Property
NAlignerException Class
NAlignerException Members
NAlignerException Constructor
NAlignerException Constructor ()
NAlignerException Constructor (String)
NAlignerException Constructor (String, Exception)
NAlignerException Constructor (Exception)
Tokenizer Class
Tokenizer Members
Tokenizer Constructor
Tokenizer Constructor (String)
Tokenizer Constructor (String, String)
Tokenizer Constructor (String, String, Boolean)
Properties
Count Property
Current Property
Methods
HasMoreTokens Method
MoveNext Method
NextToken Method
NextToken Method ()
NextToken Method (String)
Reset Method
