JAligner

JAligner: Java implementation of Smith-Waterman algorithm for sequence alignment

Packages
jaligner Core classes for the implementation of Smith-Waterman-Gotoh algorithm
jaligner.example Example for using API of JAligner to perform pairwise sequence alignment.
jaligner.formats Group of formats for output alignments.
jaligner.matrix Scoring matrices package.
jaligner.test Testing package.
jaligner.ui Command line and graphical user interface.
jaligner.ui.clipboard Clipboard handling for JNLP and AWT.
jaligner.ui.filechooser File loading and storing.
jaligner.ui.images Images used in the toolbar.
jaligner.ui.logging Logging package.
jaligner.ui.util Text component utilites package.
jaligner.util Utility classes for helping core and GUI classes.

 


JAligner

Ahmed Moustafa (ahmed@users.sf.net)SourceForge.net
The source code of JAligner is licensed under The GNU General Public License (GPL)