JAligner

jaligner.formats
Class Format

java.lang.Object
  extended byjaligner.formats.Format
Direct Known Subclasses:
CLUSTAL, FASTA, Pair

public abstract class Format
extends java.lang.Object

Abstract format

Author:
Ahmed Moustafa (ahmed@users.sf.net)

Constructor Summary
Format()
           
 
Method Summary
abstract  java.lang.String format(Alignment alignment)
          Formats alignment
 java.lang.String getId()
          Returns format id
 void setId(java.lang.String id)
          Sets format id
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Format

public Format()
Method Detail

format

public abstract java.lang.String format(Alignment alignment)
Formats alignment

Parameters:
alignment -
Returns:
formatted alignment
See Also:
Alignment

setId

public void setId(java.lang.String id)
Sets format id

Parameters:
id - to set

getId

public java.lang.String getId()
Returns format id

Returns:
id

JAligner

Ahmed Moustafa (ahmed@users.sf.net)SourceForge.net
The source code of JAligner is licensed under The GNU General Public License (GPL)