jaligner.example
Class SmithWatermanGotohExample

java.lang.Object
  jaligner.example.SmithWatermanGotohExample

public class SmithWatermanGotohExample

extends java.lang.Object

Example of using JAligner API to align P53 human aganist P53 mouse using Smith-Waterman-Gotoh algorithm.

Author:

Ahmed Moustafa (ahmed@users.sf.net)

Constructor Summary

SmithWatermanGotohExample()

Method Summary

static java.lang.String	loadP53Human()
static java.lang.String	loadP53Mouse()
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SmithWatermanGotohExample

public SmithWatermanGotohExample()

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args -

loadP53Human

public static java.lang.String loadP53Human()
                                     throws java.io.IOException

Returns:

sequence string

Throws:

java.io.IOException

loadP53Mouse

public static java.lang.String loadP53Mouse()
                                     throws java.io.IOException

Returns:

sequence string

Throws:

java.io.IOException