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Packages |
| jaligner |
Core classes for the implementation of Smith-Waterman-Gotoh algorithm |
| jaligner.example |
Example for using API of JAligner to perform pairwise sequence alignment. |
| jaligner.formats |
Group of formats for output alignments. |
| jaligner.matrix |
Scoring matrices package. |
| jaligner.test |
Testing package. |
| jaligner.ui |
Command line and graphical user interface. |
| jaligner.ui.clipboard |
Clipboard handling for JNLP and AWT. |
| jaligner.ui.filechooser |
File loading and storing. |
| jaligner.ui.images |
Images used in the toolbar. |
| jaligner.ui.logging |
Logging package. |
| jaligner.ui.util |
Text component utilites package. |
| jaligner.util |
Utility classes for helping core and GUI classes. |