jaligner.formats
Class Format

java.lang.Object
  jaligner.formats.Format

Direct Known Subclasses:

CLUSTAL, FASTA, Pair

public abstract class Format

extends java.lang.Object

Abstract format

Author:

Ahmed Moustafa (ahmed@users.sf.net)

Constructor Summary

Format()

Method Summary

abstract java.lang.String	format(Alignment alignment) Formats alignment
java.lang.String	getId() Returns format id
void	setId(java.lang.String id) Sets format id

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Format

public Format()

Method Detail

format

public abstract java.lang.String format(Alignment alignment)

Formats alignment

Parameters:

alignment -

Returns:

formatted alignment

See Also:

Alignment

setId

public void setId(java.lang.String id)

Sets format id

Parameters:

id - to set

getId

public java.lang.String getId()

Returns format id

Returns:

id