Hierarchy For All Packages

Package Hierarchies:

jaligner, jaligner.example, jaligner.formats, jaligner.matrix, jaligner.test, jaligner.ui, jaligner.ui.clipboard, jaligner.ui.filechooser, jaligner.ui.images, jaligner.ui.logging, jaligner.ui.util, jaligner.util

Class Hierarchy

• class java.lang.Object
  • class jaligner.ui.AlignCommandLine
  • class jaligner.Alignment
  • class jaligner.Cell
  • class jaligner.ui.clipboard.ClipboardHandlerAWT (implements jaligner.ui.clipboard.ClipboardHandler)
  • class jaligner.ui.clipboard.ClipboardHandlerFactory
  • class jaligner.ui.clipboard.ClipboardHandlerJNLP (implements jaligner.ui.clipboard.ClipboardHandler)
  • class jaligner.util.Commons
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • class jaligner.ui.AlignWindow (implements jaligner.ui.clipboard.ClipboardListener, javax.swing.event.DocumentListener)
  • class jaligner.Directions
  • class jaligner.ui.filechooser.FileChooser
    • class jaligner.ui.filechooser.FileChooserJNLP
    • class jaligner.ui.filechooser.FileChooserTrusted
  • class jaligner.ui.filechooser.FileChooserFactory
  • class jaligner.formats.Format
    • class jaligner.formats.CLUSTAL
    • class jaligner.formats.FASTA
    • class jaligner.formats.Pair
  • class jaligner.formats.FormatFactory
  • class java.util.logging.Formatter
    • class jaligner.ui.logging.RecordFormatter
  • class java.util.logging.Handler
    • class jaligner.ui.logging.DocumentHandler
  • class jaligner.Markups
  • class jaligner.matrix.MatricesCompartor (implements java.util.Comparator)
  • class jaligner.matrix.Matrix (implements java.io.Serializable)
  • class jaligner.matrix.MatrixGenerator
  • class jaligner.matrix.MatrixLoader
  • class jaligner.ui.filechooser.NamedInputStream (implements java.io.Serializable)
  • class jaligner.NeedlemanWunsch
  • class jaligner.example.NeedlemanWunschExample
  • class jaligner.NeedlemanWunschGotoh
  • class jaligner.example.NeedlemanWunschGotohExample
  • class jaligner.test.NeedlemanWunschGotohTester
  • class jaligner.test.NeedlemanWunschTester
  • class jaligner.ui.util.PrintJobMointor
  • class jaligner.test.RandomSequenceGenerator
  • class jaligner.Sequence (implements java.io.Serializable)
  • class jaligner.util.SequenceParser
  • class jaligner.SmithWatermanGotoh
  • class jaligner.example.SmithWatermanGotohExample
  • class jaligner.test.SmithWatermanGotohTester
  • class jaligner.ui.util.TextComponentUtil
  • class java.lang.Thread (implements java.lang.Runnable)
    • class jaligner.ui.clipboard.ClipboardPoller
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class jaligner.ui.filechooser.FileChooserException
      • class jaligner.matrix.MatrixLoaderException
      • class jaligner.util.SequenceParserException
      • class jaligner.ui.util.TextComponentUtilException
  • class jaligner.ui.images.ToolbarIcons
  • class jaligner.TracebackNode

Interface Hierarchy

• interface jaligner.ui.clipboard.ClipboardHandler
• interface jaligner.ui.clipboard.ClipboardListener